Research Group: Nano-Biophysics (NBP)

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Article

Shvadchak, Volodymyr V. and Subramaniam, Vinod (2014) A Four-Amino Acid Linker between Repeats in the α-Synuclein Sequence Is Important for Fibril Formation. Biochemistry, 53 (2). 279 - 281. ISSN 0006-2960

Bruijn, Helene E. de and Lenferink, Aufried T.M. and Kooyman, Rob P.H. and Greve, Jan (1991) A dielectric/metal layer system as chemical sensor. Optics Communications, 86 (6). pp. 444-448. ISSN 0030-4018

Snijder-van As, M.I. and Rieger, B. and Joosten, B. and Subramaniam, V. and Figdor, C.G. and Kanger, J.S. (2009) A hybrid total internal reflection fluorescence and optical tweezers microscope to study cell adhesion and membrane protein dynamics of single living cells. Journal of Microscopy, 233 (1). pp. 84-92. ISSN 0022-2720

Schasfoort, R.B.M. and Kooyman, R.P.H. and Bergveld, P. and Greve, J. (1990) A new approach to immunoFET operation. Biosensors and Bioelectronics, 5 (2). pp. 103-124. ISSN 0956-5663

Lenferink, A.T.M. and Kooyman, R.P.H. and Greve, J. (1991) An improved optical method for surface plasmon resonance experiments. Sensors and Actuators B: Chemical, 3 (4). pp. 261-265. ISSN 0925-4005

Ludden, Manon J.W. and Mulder, Alart and Schulze, Katrin and Subramaniam, Vinod and Tampe, Robert and Huskens, Jurriaan (2008) Anchoring of Histidine-Tagged Proteins to Molecular Printboards: Self-assembly, Thermodynamic Modeling, and Patterning. Chemistry: a European Journal, 14 (7). pp. 2044-2051. ISSN 0947-6539

Blum, C. (2012) Answer to energy transfer debate could impact areas from photovoltaics to quantum information (Internet article).

Drescher, Malte and Veldhuis, Gertjan and Rooijen, Bart D. van and Milikisyants, Sergey and Subramaniam, Vinod and Huber, Martina (2008) Antiparallel Arrangement of the Helices of Vesicle-Bound α-Synuclein. Journal of the American Chemical Society, 130 (25). pp. 7796-7797. ISSN 0002-7863

Ludden, Manon J.W. and Li, Xiao and Greve, Jan and Amerongen, Aart van and Escalante, Maryana and Subramaniam, Vinod and Reinhoudt, David N. and Huskens, Jurriaan (2008) Assembly of Bionanostructures onto β-Cyclodextrin Molecular Printboards for Antibody Recognition and Lymphocyte Cell Counting. Journal of the American Chemical Society, 130 (22). pp. 6964-6973. ISSN 0002-7863

Meddens, M.B.M. and Rieger, B. and Figdor, C.G. and Cambi, A. and Dries, K. van den (2013) Automated podosome identification and characterization in fluorescence microscopy images. Microscopy and microanalysis, 19 (1). 180 - 189. ISSN 1431-9276

Dudia, Alma and Kocer, Armagan and Subramaniam, Vinod and Kanger, Johannes S. (2008) Biofunctionalized Lipid−Polymer Hybrid Nanocontainers with Controlled Permeability. Nano letters, 8 (4). pp. 1105-1110. ISSN 1530-6984

Radosevic, Katarina and Leeuwen, Anne Marie T. van and Segers-Nolten, Ine M.J. and Figdor, Carl G. and Grooth, Bart G. de and Greve, Jan (1994) Changes in actin organization during the cytotoxic process. Cytometry Part A, 15 (4). pp. 320-326. ISSN 0196-4763

Blum, Christian and Mosk, Allard P. and Nikolaev, Ivan S. and Subramaniam, Vinod and Vos, Willem L. (2008) Color Control of Natural Fluorescent Proteins by Photonic Crystals. Small, 4 (4). pp. 492-496. ISSN 1613-6829

Kassies, R. and Werf, K.O. van der and Lenferink, A.T.M. and Hunter, C.N. and Olsen, J.D. and Subramaniam, V. and Otto, C. (2005) Combined AFM and confocal fluorescence microscope for applications in bio-nanotechnology. Journal of Microscopy, 217 (1). pp. 109-116. ISSN 0022-2720

Huisstede, Jurgen H.G. and Subramaniam, Vinod and Bennink, Martin L. (2007) Combining optical tweezers and scanning probe microscopy to study DNA-protein interactions. Microscopy Research and Technique, 70 (1). pp. 26-33. ISSN 1059-910X

Schasfoort, R.B.M. and Keldermans, C.E.J.M. and Kooyman, R.P.H. and Bergveld, P. and Greve, J. (1990) Competitive immunological detection of progesterone by means of the ion-step induced response of an immunoFET. Sensors and Actuators B: Chemical, 1 (1-6). pp. 368-372. ISSN 0925-4005

Raaij, Martijn E. van and Gestel, Jeroen van and Segers-Nolten, Ine M.J. and Leeuw, Simon W. de and Subramaniam, Vinod (2008) Concentration Dependence of α-Synuclein Fibril Length Assessed by Quantitative Atomic Force Microscopy and Statistical-Mechanical Theory. Biophysical Journal, 95 (10). pp. 4871-4878. ISSN 0006-3495

Rozkiewicz, Dorota I. and Kraan, Yvonne and Werten, Marc W.T. and Wolf, Frits A. de and Subramaniam, Vinod and Ravoo, Bart Jan and Reinhoudt, David N. (2006) Covalent Microcontact Printing of Proteins for Cell Patterning. Chemistry: a European Journal, 12 (24). pp. 6290-6297. ISSN 0947-6539

Maury, Pascale and Escalante, Maryana and Peter, Mária and Reinhoudt, David N. and Subramaniam, Vinod and Huskens, Jurriaan (2007) Creating Nanopatterns of His-Tagged Proteins on Surfaces by Nanoimprint Lithography Using Specific NiNTA-Histidine Interactions. Small, 3 (9). pp. 1584-1592. ISSN 1613-6829

Volkova, K.D. and Kovalska, V.B. and Balanda, A.O. and Vermeij, R.J. and Subramaniam, V. and Slominskii, Yu.L. and Yarmoluk, S.M. (2007) Cyanine dye–protein interactions: Looking for fluorescent probes for amyloid structures. Journal of Biochemical and Biophysical Methods, 70 (5). pp. 727-733. ISSN 0165-022X

Lieleg, O. and Schmoller, K.M. and Claessens, M.M.A.E. and Bausch, A.R. (2009) Cytoskeletal Polymer Networks: Viscoelastic Properties are Determined by the Microscopic Interaction Potential of Cross-links. Biophysical Journal, 96 (3). pp. 4725-4732. ISSN 0006-3495

Huisstede, J.H.G. and Rooijen, B.D. van and Werf, K.O. van der and Bennink, M.L. and Subramaniam, V. (2006) Dependence of silicon position-detector bandwidth on wavelength, power, and bias. Optics Letters, 31 (5). pp. 610-612. ISSN 0146-9592

Bruijn, Helene E. de and Altenburg, Bert S.F. and Kooyman, Rob P.H. and Greve, Jan (1991) Determination of thickness and dielectric constant of thin transparent dielectric layers using surface plasmon resonance. Optics Communications, 82 (5-6). pp. 425-432. ISSN 0030-4018

Teller, Carsten and Halamek, Jan and Žeravík, Jiri and Stöcklein, Walter F.M. and Scheller, Frieder W. (2008) Development of a bifunctional sensor using haptenized acetylcholinesterase and application for the detection of cocaine and organophosphates. Biosensors and Bioelectronics, 24 (1). pp. 111-117. ISSN 0956-5663

Ymeti, Aurel and Kanger, Johannes S. and Wijn, Robert and Lambeck, Paul V. and Greve, Jan (2002) Development of a multichannel integrated interferometer immunosensor. Sensors and Actuators B: Chemical, 83 (1-2). pp. 1-7. ISSN 0925-4005

Heideman, R.G. and Kooyman, R.P.H. and Greve, J. (1991) Development of an optical waveguide interferometric immunosensor. Sensors and Actuators B: Chemical, 4 (3-4). pp. 297-299. ISSN 0925-4005

Evers, D.J. and Nachabe, R. and Klomp, H.M. and Sandick, J.W. van and Wouters, M.W. and Lucassen, G.W. and Hendriks, B.H. and Wesseling, J. and Ruers, T.J.M. (2012) Diffuse reflectance spectroscopy: a new guidance tool for improvement of biopsy procedures in lung malignancies. Clinical lung cancer, 13 (6). 424 - 431. ISSN 1525-7304

Evers, D.J. and Nachabe, R. and Vrancken Peeters, M.J. and Hage, J.A. van der and Oldenburg, H.S. and Rutgers, E.J. and Lucassen, G.W. and Hendriks, B.H. and Wesseling, J. and Ruers, T.J.M. (2013) Diffuse reflectance spectroscopy: towards clinical application in breast cancer. Breast cancer research and treatment, 137 (1). 155 - 165. ISSN 0167-6806

Rusu, Cristina and Oever, Ronny van 't and Boer, Meint J. de and Jansen, Henri V. and Berenschot, J.W. and Bennink, Martin L. and Kanger, Johannes S. and Grooth, Bart G. de and Elwenspoek, Miko and Greve, Jan and Brugger, Jürgen and Berg, Albert van den (2001) Direct Integration of Micromachined Pipettes in a Flow Channel for Single DNA Molecule Study by Optical Tweezers. Journal of Microelectromechanical Systems, 10 (2). pp. 238-246. ISSN 1057-7157

Vries, Anthony H.B. de and Krenn, Bea E. and Driel, Roel van and Subramaniam, Vinod and Kanger, Johannes S. (2007) Direct Observation of Nanomechanical Properties of Chromatin in Living Cells. Nano letters, 7 (5). pp. 1424-1427. ISSN 1530-6984

Reynolds, Nicholas P. and Janusz, Stefan and Escalante-Marun, Maryana and Timney, John and Ducker, Robert E. and Olsen, John D. and Otto, Cees and Subramaniam, Vinod and Leggett, Graham J. and Hunter, C. Neil (2007) Directed Formation of Micro- and Nanoscale Patterns of Functional Light-Harvesting LH2 Complexes. Journal of the American Chemical Society, 129 (47). pp. 14625-14631. ISSN 0002-7863

Escalante, Maryana and Maury, Pascale and Bruinink, Christiaan M. and Werf, Kees van der and Olsen, John D. and Timney, A. and Huskens, Jurriaan and Hunter, C. Neil and Subramaniam, Vinod and Otto, Cees (2008) Directed assembly of functional light harvesting antenna complexes onto chemically patterned surfaces. Nanotechnology, 19 (2). 02101-1. ISSN 0957-4484

Cherny, Dmitry and Hoyer, Wolfgang and Subramaniam, Vinod and Jovin, Thomas M. (2004) Double-stranded DNA Stimulates the Fibrillation of α-Synuclein in vitro and is Associated with the Mature Fibrils: An Electron Microscopy Study. Journal of Molecular Biology, 344 (4). pp. 929-938. ISSN 0022-2836

Ymeti, Aurel and Greve, Jan and Lambeck, Paul V. and Wijn, Robert and Heideman, Rene G. and Kanger, Johannes S. (2005) Drift correction in a multichannel integrated optical young interferometer. Applied Optics, 44 (17). pp. 3409-3412. ISSN 0003-6935

Bennink, Martin L. and Nikova, Dessy N. and Werf, Kees O. van der and Greve, Jan (2003) Dynamic imaging of single DNA–protein interactions using atomic force microscopy. Analytica Chimica Acta, 479 (1). pp. 3-15. ISSN 0003-2670

Zijlstra, Niels and Claessens, Mireille M.A.E. and Blum, Christian and Subramaniam, Vinod (2014) Elucidating the Aggregation Number of Dopamine-Induced alpha-Synuclein Oligomeric Assemblies. Biophysical journal, 106 . 440 - 446. ISSN 0006-3495

Gill, R. and Tian, L. and Amerongen, H. and Subramaniam, V. (2013) Emission enhancement and lifetime modification of phosphorescence on silver nanoparticle aggregates. Physical chemistry chemical physics (PCCP), 15 (38). 15734 - 15739. ISSN 1463-9076

Bratchenia, Aliaksandr and Molenaar, Robert and Leeuwen, Ton G. van and Kooyman, Rob P.H. (2009) Errata: Millimeter-resolution acousto-optic quantitative imaging in a tissue model system. Journal of Biomedical Optics, 14 . 049802. ISSN 1083-3668

Basabe-Desmonts, Lourdes and Wu, Chien-Ching and Werf, Kees O. van der and Peter, Mária and Bennink, Martin and Otto, Cees and Velders, Aldrik H. and Reinhoudt, David N. and Subramaniam, Vinod and Crego-Calama, Mercedes (2008) Fabrication and Visualization of Metal-Ion Patterns on Glass by Dip-Pen Nanolithography. ChemPhysChem, 9 (12). pp. 1680-1687. ISSN 1439-4235

Hoang, T.H. and Segers-Nolten, I.M. and Berenschot, J.W. and Boer, M.J. de and Tas, N.R. and Haneveld, J. and Elwenspoek, M.C. (2009) Fabrication and interfacing of nanochannel devices for single-molecule studies. Journal of Micromechanics and Microengineering, 19 (065017). 065017. ISSN 0960-1317

Ymeti, Aurel and Greve, Jan and Lambeck, Paul V. and Wink, Thijs and Hovell, Stephan W.F.M. van and Beumer, Tom A.M. and Wijn, Robert R. and Heideman, Rene G. and Subramaniam, Vinod and Kanger, Johannes S. (2007) Fast, Ultrasensitive Virus Detection Using a Young Interferometer Sensor. Nano Letters, 7 (2). pp. 394-397. ISSN 1530-6984

Gill, R. and Goeken, K.L. and Subramaniam, V. (2013) Fast, single-step, and surfactant-free oligonucleotide modification of gold nanoparticles using DNA with a positively charged tail. Chemical communications, 49 (97). 11400 - 11402. ISSN 1359-7345

Lechuga, L.M. and Lenferink, A.T.M. and Kooyman, R.P.H. and Greve, J. (1995) Feasibility of evanescent wave interferometer immunosensors for pesticide detection: chemical aspects. Sensors and Actuators B: Chemical, 25 (1-3). pp. 762-765. ISSN 0925-4005

Schipper, E.F. and Kooyman, R.P.H. and Heideman, R.G. and Greve, J. (1995) Feasibility of optical waveguide immunosensors for pesticide detection: physical aspects. Sensors and Actuators B: Chemical, 24-25 (1-3). pp. 90-93. ISSN 0925-4005

Bratchenia, A. and Molenaar, R. and Kooyman, R.P.H. (2008) Feasibility of quantitative determination of local optical absorbances in tissue-mimicking phantoms using acousto-optic sensing. Applied Physics Letters, 92 (11). p. 113901. ISSN 0003-6951

Eenink, R.G. and Bruijn, H.E. de and Kooyman, R.P.H. and Greve, J. (1990) Fibre-fluorescence immunosensor based on evanescent wave detection. Analytica Chimica Acta, 238 . pp. 317-321. ISSN 0003-2670

Graft, Marja van and Kraan, Yvonne M. and Segers-Nolten, Ine M.J. and Radosevic, Katarina and Grooth, Bart G. de and Greve, Jan (1993) Flow cytometric measurement of [Ca2+]i and pHi in conjugated natural killer cells and K562 target cells during the cytotoxic process. Cytometry Part A, 14 (3). pp. 257-264. ISSN 0196-4763

Huisstede, J.H.G. and Werf, K.O. van der and Bennink, M.L. and Subramaniam, V. (2006) Force constant calibration corrections for silicon position detectors in the near-infrared. Optics Express, 14 (19). pp. 8476-8481. ISSN 1094-4087

Berger, C.E.H. and Werf, K.O. van der and Kooyman, R.P.H. and Grooth, B.G. de and Greve, J. (1995) Functional Group Imaging by Adhesion AFM Applied to Lipid Monolayers. Langmuir, 11 (11). pp. 4188-4192. ISSN 0743-7463

Claessens, M.M.A.E. and Semmrich, C. and Ramos, L. and Bausch, A.R. (2008) Helical twist controls the thickness of F-actin bundles. Proceedings of the National Academy of Sciences of the United States of America, PNAS, 105 (26). pp. 8819-8822. ISSN 0027-8424

Delden, C.J. van and Lens, J.P. and Kooyman, R.P.H. and Engbers, G.H.M. and Feijen, J. (1997) Heparinization of gas plasma-modified polystyrene surfaces and the interactions of these surfaces with proteins studied with surface plasmon resonance plasmon resonance. Biomaterials, 18 (12). pp. 845-852. ISSN 0142-9612

Ridder, Jannemarie de and Walsum, Marlies van and Verhoef, Cornelis and Nagtegaal, Iris and Wilt, Johannes de and Ruers, T.J.M. (2013) Hepatic resection for metastatic melanoma in The Netherlands: survival and prognostic factors. Melanoma research, 23 (1). 27 - 32. ISSN 0960-8931

Terstappen, Leon W.M.M. and Johnsen, Steen and Segers-Nolten, Ine M.J. and Loken, Michael R. (1990) Identification and characterization of plasma cells in normal human bone marrow by high-resolution flow cytometry. Blood, 76 (9). pp. 1739-1747. ISSN 0006-4971

Heideman, Rene G. and Kooyman, Rob P.H. and Greve, Jan (1994) Immunoreactivity of adsorbed anti human chorionic gonadotropin studied with an optical waveguide interferometric sensor. Biosensors and Bioelectronics, 9 (1). pp. 33-43. ISSN 0956-5663

Muntean, C.M. and Puppels, G.J. and Greve, J. and Segers-Nolten, G.M.J. (2002) Influence of Ca2+ cations on low pH-induced DNA structural transitions. Biopolymers, 67 (4-5). pp. 282-284. ISSN 0006-3525

Schasfoort, R.B.M. and Streekstra, G.J. and Bergveld, P. and Kooyman, R.P.H. and Greve, J. (1989) Influence of an immunological precipitate on D.C. and A.C. behaviour of an isfet. Sensors and Actuators, 18 (2). pp. 119-129. ISSN 0250-6874

Jose, Jithin and Grootendorst, Diederik J. and Vijn, Thomas W. and Wouters, Michel and Boven, Hester van and Leeuwen, Ton G. van and Steenbergen, Wiendelt and Ruers, Theo J.M. and Manohar, Srirang (2011) Initial results of imaging melanoma metastasis in resected human lymph nodes using photoacoustic computed tomography. Journal of Biomedical Optics, 16 (9). 096021 . ISSN 1083-3668

Ymeti, A. and Kanger, J.S. and Greve, J. and Besselink, G.A.J. and Lambeck, P.V. and Wijn, R. and Heideman, R.G. (2005) Integration of microfluidics with a four-channel integrated optical Young interferometer immunosensor. Biosensors and Bioelectronics, 20 (7). pp. 1417-1421. ISSN 0956-5663

Bernhardi, E.H. and Werf, K.O. van der and Hollink, A.J.F. and Wörhoff, K. and Ridder, R.M. de and Subramaniam, V. and Pollnau, M. (2013) Intra-laser-cavity microparticle sensing with a dual-wavelength distributed-feedback laser. Laser & photonics reviews, 7 (4). pp. 589-595. ISSN 1863-8899

Grootendorst, D.J. and Fratila, R.M. and Visscher, M. and Haken, B. ten and Wezel, R.J.A. van and Rottenberg, S. and Steenbergen, W. and Manohar, S. and Ruers, T.J.M. (2013) Intra-operative ex vivo photoacoustic nodal staging in a rat model using a clinical superparamagnetic iron oxide nanoparticle dispersion. Journal of biophotonics, 6 (6-7). 493 - 504. ISSN 1864-063X

Sijtsema, Nanna M. and Tibbe, Arjan G.J. and Segers-Nolten, Ine G.M.J. and Verhoeven, Arhur J. and Weening, Ron S. and Greve, Jan and Otto, Cees (2000) Intracellular Reactions in Single Human Granulocytes upon Phorbol Myristate Acetate Activation using Confocal Raman Microspectroscopy. Biophysical Journal, 78 (5). pp. 2606-2613. ISSN 0006-3495

Puppels, G.J. and Olminkhof, J.H.F. and Segers-Nolten, G.M.J. and Otto, C. and Mul, F.F.M. de and Greve, J. (1991) Laser irradiation and Raman spectroscopy of single living cells and chromosomes: Sample degradation occurs with 514.5 nm but not with 660 nm laser light. Experimental Cell Research, 195 (2). pp. 361-367. ISSN 0014-4827

Ungureanu, Constantin and Kroes, Rene and Petersen, Wilma and Groothuis, Tom A.M. and Ungureanu, Felicia and Janssen, Hans and Leeuwen, Fijs W.B. van and Kooyman, Rob P.H. and Manohar, Srirang and Leeuwen, Ton G. van (2011) Light Interactions with Gold Nanorods and Cells: Implications for Photothermal Nanotherapeutics. Nano Letters, 11 (5). pp. 1887-1894. ISSN 1530-6984

Uricanu, V.I. and Duits, M.H.G. and Nelissen, R.M.F. and Bennink, M.L. and Mellema, J. (2003) Local Structure and Elasticity of Soft Gelatin Gels Studied with Atomic Force Microscopy. Langmuir, 19 (20). pp. 8182-8194. ISSN 0743-7463

Escalantet, Maryana and Lenferink, Aufried and Zhao, Yiping and Tas, Niels and Huskens, Jurriaan and Hunter, C. Neil and Subramaniam, Vinod and Otto, Cees (2010) Long-Range Energy Propagation in Nanometer Arrays of Light Harvesting Antenna Complexes. Nano Letters, 10 (4). pp. 1450-1457. ISSN 1530-6984

Lee, Jung S. and Groothuis, Tom and Cusan, Claudia and Mink, Daniel and Feijen, Jan (2011) Lysosomally cleavable peptide-containing polymersomes modified with anti-EGFR antibody for systemic cancer chemotherapy. Biomaterials, 32 (34). pp. 9144-9153. ISSN 0142-9612

Bharde, A.A. and Palankar, R. and Fritsch, C. and Klaver, A. and Kanger, J.S. and Jovin, T.M. and Arndt-jovin, D.J. (2013) Magnetic Nanoparticles as Mediators of Ligand-Free Activation of EGFR Signaling. PLOS one, 8 (7). 1 - 11. ISSN 1932-6203

Yang, Lanti and Werf, Kees O. van der and Fitie, Carel F.C. and Bennink, Martin L. and Dijkstra, Pieter J. and Feijen, Jan (2008) Mechanical Properties of Native and Cross-linked Type I Collagen Fibrils. Biophysical Journal, 94 (6). pp. 2204-2211. ISSN 0006-3495

Yang, Lanti and Fitie, Carel F.C. and Werf, Kees O. van der and Bennink, Martin L. and Dijkstra, Pieter J. and Feijen, Jan (2008) Mechanical properties of single electrospun collagen type I fibers. Biomaterials, 29 (8). pp. 955-962. ISSN 0142-9612

Croisier, F. and Duwez, A.-S. and Jerome, C. and Leanard, A.F. and Werf, K.O. van der and Dijkstra, P.J. and Bennink, M.L. (2012) Mechanical testing of electrospun PCL fibers. Acta biomaterialia, 8 (1). 218 - 224. ISSN 1742-7061

Rooijen, Bart D. van and Claessens, Mireille M.A.E. and Subramaniam, Vinod (2008) Membrane binding of oligomeric α-synuclein depends on bilayer charge and packing. FEBS Letters, 582 (27). pp. 3788-3792. ISSN 0014-5793

Tucker, Jaimey D. and Siebert, C. Alistair and Escalante, Maryana and Adams, Peter G. and Olsen, John D. and Otto, Cees and Stokes, David L. and Hunter, C. Neil (2010) Membrane invagination in Rhodobacter sphaeroides is initiated at curved regions of the cytoplasmic membrane, then forms both budded and fully detached spherical vesicles. Molecular Microbiology, 76 (4). 833 - 847. ISSN 0950-382X

Rooijen, Bart D. van and Claessens, Mireille M.A.E. and Subramaniam, Vinod (2010) Membrane permeabilization by oligomeric α-synuclein: in search of the mechanism. PLoS ONE, 5 (12). e14292. ISSN 1932-6203

Husken, B.H. and Woldering, L.A. and Blum, C. and Vos, W.L. (2009) Method to deterministically study photonic nanostructures in different experimental instruments. Journal of Microscopy, 233 (1). pp. 18-23. ISSN 0022-2720

Rijt, Joost A.J. van der and Werf, Kees O. van der and Bennink, Martin L. and Dijkstra, Pieter J. and Feijen, Jan (2005) Micromechanical Testing of Individual Collagen Fibrils. Macromolecular Bioscience, 6 (9). pp. 697-702. ISSN 1616-5187

Yang, L. and Werf, K.O. van der and Dijkstra, P.J. and Feijen, J. and Bennink, M.L. (2012) Micromechanical analysis of native and cross-linked collagen type 1 fibrils supports the existence of microfibrils. Journal of the mechanical behavior of biomedical materials, 6 . 148 - 158. ISSN 1751-6161

Yang, Lanti and Werf, K.O. van der and Koopman, Bart F.J.M. and Subramaniam, Vinod and Bennink, Martin L. and Dijkstra, Pieter J. and Feijen, Jan (2007) Micromechanical bending of single collagen fibrils using atomic force microscopy. Journal of Biomedical Materials Research. Part A, 82 (1). pp. 160-168. ISSN 1549-3296

Koenders, Mieke M.J.F. and Yang, Lanti and Wismans, Ronnie G. and Werf, Kees O. van der and Reinhardt, Dieter P. and Daamen, Willeke and Bennink, Martin L. and Dijkstra, Pieter J. and Kuppevelt, Toin H. van and Feijen, Jan (2009) Microscale mechanical properties of single elastic fibers: The role of fibrillin-microfibrils. Biomaterials, 30 (13). pp. 2425-2432. ISSN 0142-9612

Bratchenia, Aliaksandr and Molenaar, Robert and Kooyman, Rob P.H. and Leeuwen, Ton G. van (2009) Millimeter-resolution acousto-optic quantitative imaging in a tissue model system. Journal of Biomedical Optics, 14 (3). 034031. ISSN 1083-3668

Hopman, Wico C.L. and Werf, Kees O. van der and Hollink, A.J.F. and Bogaerts, Wim and Subramaniam, Vinod and Ridder, René M. de (2008) Modeling and experimental verification of the dynamic interaction of an AFM-tip with a photonic crystal microcavity. IEEE Photonics Technology Letters, 20 (1). pp. 57-59. ISSN 1041-1135

Uhlenheuer, Dana A. and Wasserberg, Dorothee and Nguyen, Hoang and Zhang, Li and Blum, Christian and Subramaniam, Vinod and Brunsveld, Luc (2009) Modulation of Protein Dimerization by a Supramolecular Host–Guest System. Chemistry: a European Journal, 15 (35). pp. 8779-8790. ISSN 0947-6539

Schasfoort, R.B.M. and Bergveld, P. and Bomer, J. and Kooyman, R.P.H. and Greve, J. (1989) Modulation of the ISFET response by an immunological reaction. Sensors and Actuators, 17 (3-4). pp. 531-535. ISSN 0250-6874

Huisman, Bart-Hendrik and Kooyman, Rob P.H. and Veggel, Frank C.J.M. van and Reinhoudt, David N. (1996) Molecular recognition by self-assembled monolayers detected with surface plasmon resonance. Advanced Materials, 8 (7). pp. 561-564. ISSN 0935-9648

Fernández, Claudio O. and Hoyer, Wolfgang and Zweckstetter, Markus and Jares-Erijman, Elizabeth A. and Subramaniam, Vinod and Griesinger, Christian and Jovin, Thomas M. (2004) NMR of α-synuclein–polyamine complexes elucidates the mechanism and kinetics of induced aggregation. EMBO Journal, 23 (10). pp. 2039-2046. ISSN 0261-4189

Hopman, W.C.L. and Werf, K.O. van der and Hollink, A.J.F. and Bogaerts, W. and Subramaniam, V. and Ridder, R.M. de (2006) Nano-mechanical tuning and imaging of a photonic crystal micro-cavity resonance. Optics Express, 14 (19). pp. 8745-8752. ISSN 1094-4087

Sweers, Kim and Werf, Kees van der and Bennink, Martin and Subramaniam, Vinod (2011) Nanomechanical properties of α-synuclein amyloid fibrils: a comparative study by nanoindentation, harmonic force microscopy, and Peakforce QNM. Nanoscale Research Letters, 6 (1). p. 270. ISSN 1931-7573

Escalante, Maryana and Zhao, Yiping and Ludden, Manon J.W. and Vermeij, Rolf and Olsen, John D. and Berenschot, Erwin and Hunter, C. Neil and Huskens, Jurriaan and Subramaniam, Vinod and Otto, Cees (2008) Nanometer arrays of functional light harvesting antenna complexes by nanoimprint lithography and host-guest interactions. Journal of the American Chemical Society, 130 (28). pp. 8892-8893. ISSN 0002-7863

Blum, C. and Zijlstra, N. and Lagendijk, A. and Wubs, M. and Mosk, A.P. and Subramaniam, V. and Vos, W.L. (2012) Nanophotonic control of the Forster resonance energy transfer efficiency. Physical review letters, 109 (20). 203601 - . ISSN 0031-9007

Hollander, R.B.G. de and Hulst, N.F. van and Kooyman, R.P.H. (1995) Near field plasmon and force microscopy. Ultramicroscopy, 57 (2-3). pp. 263-269. ISSN 0304-3991

Kuperstein, Inna and Broersen, Kerensa and Benilova, Iryna and Rozenski, Jef and Jonckheere, Wim and Segers-Nolten, Ine and Werf, Kees van der and Subramaniam, Vinod (2010) Neurotoxicity of Alzheimer's disease Aβ peptides is induced by small changes in the Aβ$_{42}$ to Aβ$_{40}$ ratio. EMBO Journal, 29 (19). pp. 3408-3420. ISSN 0261-4189

Schleifenbaum, Frank and Blum, Christian and Elgass, Kirstin and Subramaniam, Vinod and Meixner, Alfred J. (2008) New Insights into the Photophysics of DsRed by Multiparameter Spectroscopy on Single Proteins. Journal of Physical Chemistry B: Materials, surfaces, interfaces, & biophysical, 112 (25). pp. 7669-7674. ISSN 1520-6106

Schipper, E.F. and Bergevoet, A.J.H. and Kooyman, R.P.H. and Greve, J. (1997) New detection method for atrazine pesticides with the optical waveguide Mach-Zehnder immunosensor. Analytica Chimica Acta, 341 (2-3). pp. 171-176. ISSN 0003-2670

Otto, Cees and Tukker, Teus and Voroshilov, Artemy and Kanger, Hans and Greve, Jan (1996) Niet-Lineaire Vibratie Spectroscopiën van Biomoleculaire Systemen. Van A tot Q (10). pp. 43-51.

Bertolotti, J. and Putten, E.G. van and Blum, C. and Lagendijk, A. and Vos, W.L. and Mosk, A.P. (2012) Non-invasive imaging through opaque scattering layers. Nature, 491 . 232 - 234. ISSN 0028-0836

Radosevic, Katarina and Leeuwen, Anne Marie T. van and Segers-Nolten, Ine M.J. and Figdor, Carl G. and Grooth, Bart G. de and Greve, Jan (1995) Occurrence and a possible mechanism of penetration of natural killer cells into k562 target cells during the cytotoxic interaction. Cytometry Part A, 20 (4). pp. 273-280. ISSN 0196-4763

Wessels, R. and Bruin, D.M. de and Faber, D.J. and Boven, H.H. van and Vincent, A.D. and Leeuwen, A.G.J.M. van and Beurden, M.F.B. van and Ruers, T.J.M. (2012) Optical Coherence Tomography in vulvar intraepithelial neoplasia. Journal of biomedical optics, 17 (11). 1 - 6. ISSN 1083-3668

Wessels, R. and Bruin, D.M. de and Faber, D.J. and Leeuwen, T.G. van and Beurden, M.F.B. van and Ruers, T.J.M. (2014) Optical biopsy of epithelial cancers by optical coherence tomography. Lasers in medical science, 29 (3). 1297 - 1305. ISSN 0268-8921

Evers, D.J. and Nachabe, R. and Hompes, D. and Coevorden, F. van and Lucassen, G.W. and Hendriks, B.H. and Velthuysen, M.L. van and Wesseling, J. and Ruers, T.J.M. (2013) Optical sensing for tumor detection in the liver. European journal of surgical oncology, 39 (1). 68 - 75. ISSN 0748-7983

Pope, Lisa H. and Bennink, Martin L. and Greve, Jan (2003) Optical tweezers stretching of chromatin. Journal of muscle research and cell motility, 23 (5-6). pp. 397-407. ISSN 0142-4319

Kosters, P.G.H. and Kooyman, R.P.H. (1998) Optimum IR measurement conditions for thin layers on dielectric surfaces. Thin Solid Films, 327-32 . pp. 283-286. ISSN 0040-6090

Wasserberg, D. and Nicosia, C. and Tromp, E.E. and Subramaniam, V. and Huskens, J. and Jonkheijm, P. (2013) Oriented protein immobilization using covalent and non-covalent chemistry on a self-reporting surface. Journal of the American Chemical Society, 135 (8). 3104 - 3111. ISSN 0002-7863

Vries, Anthony H.B. de and Kanger, Johannes S. and Krenn, Bea E. and Driel, Roel van (2004) Patterned Electroplating of Micrometer Scale Magnetic Structures on Glass Substrates. Journal of microelectromechanical systems, 13 (3). pp. 391-395. ISSN 10577157

Calabretta, Alessandro and Wasserberg, Dorothee and Posthuma-Trumpie, Geertruida A. and Subramaniam, Vinod and Amerongen, Aart van and Corradini, Roberto and Tedeschi, Tullia and Sforza, Stefano and Reinhoudt, David N. and Marchelli, Rosangela and Huskens, Jurriaan and Jonkheijm, Pascal (2010) Patterning of Peptide Nucleic Acids Using Reactive Microcontact Printing. Langmuir, 27 (11). pp. 1536-1542. ISSN 0743-7463

Heideman, R.G. and Kooyman, R.P.H. and Greve, J. (1993) Performance of a highly sensitive optical waveguide Mach-Zehnder interferometer immunosensor. Sensors and Actuators B: Chemical, 10 (3). pp. 209-217. ISSN 0925-4005

Heideman, Rene G. and Kooyman, Rob P.H. and Greve, Jan (1993) Polarimetric optical-fibre sensor for biochemical measurements. Sensors and Actuators B: Chemical, 12 (3). pp. 205-212. ISSN 0925-4005

Schasfoort, R.B.M. and Bergveld, P. and Kooyman, R.P.H. and Greve, J. (1990) Possibilities and limitations of direct detection of protein charges by means of an immunological field-effect transistor. Analytica Chimica Acta, 238 . pp. 323-329. ISSN 0003-2670

Raaij, Martijn E. van and Segers-Nolten, Ine M.J. and Subramaniam, Vinod (2006) Quantitative Morphological Analysis Reveals Ultrastructural Diversity of Amyloid Fibrils from α-Synuclein Mutants. Biophysical Journal, 91 (11). L96-L98. ISSN 0006-3495

Terpstra, P.A. and Otto, C. and Segers-Nolten, G.M.J. and Kanger, J.S. and Greve, J. (1995) Raman depolarization ratios in RNA and DNA are sensitive for sugar-base coupling. Biospectroscopy, 1 (4). pp. 255-263. ISSN 1075-4261

Puppels, G.J. and Garritsen, H.S. and Segers-Nolten, G.M. and Mul, F.F. de and Greve, J. (1991) Raman microspectroscopic approach to the study of human granulocytes. Biophysical Journal, 60 (5). pp. 1046-1056. ISSN 0006-3495

Muntean, C.M. and Segers-Nolten, G.M.J. (2003) Raman microspectroscopic study of effects of Na(I) and Mg(II) ions on low pH induced DNA structural changes. Biopolymers, 72 (4). pp. 225-229. ISSN 0006-3525

Muntean, C.M. and Puppels, G.J. and Greve, J. and Segers-Nolten, G.M.J. and Cinta-Pinzaru, S. (2002) Raman microspectroscopic study on low-pH-induced DNA structural transitions in the presence of magnesium ions. Journal of Raman Spectroscopy, 33 (10). pp. 784-788. ISSN 0377-0486

Hoyer, Wolfgang and Cherny, Dmitry and Subramaniam, Vinod and Jovin, Thomas M. (2004) Rapid Self-assembly of α-Synuclein Observed by In Situ Atomic Force Microscopy. Journal of Molecular Biology, 340 (1). pp. 127-139. ISSN 0022-2836

Garcia-Parajo, M.F. and Segers-Nolten, G.M.J. and Veerman, J.A. and Greve, J. and Hulst, N.F. van (2000) Real-time light-driven dynamics of the fluorescence emission in individual green fluorescent proteins. Proceedings of the National Academy of Sciences of the United States of America, PNAS, 97 (13). pp. 7237-7242. ISSN 0027-8424

Manen, Henk-Jan van and Verkuijlen, Paul and Wittendorp, Paul and Subramaniam, Vinod and Berg, Timo K. van den and Roos, Dirk and Otto, Cees (2008) Refractive Index Sensing of Green Fluorescent Proteins in Living Cells Using Fluorescence Lifetime Imaging Microscopy. Biophysical Journal, 94 (8). L67-L69. ISSN 0006-3495

Kooyman, R.P.H. and Greve, J. and Oudshoorn, R.G.C. (1996) Refractive index and layer thickness of an adsorbing protein as reporters of monolayer formation. Thin Solid Films, 284-28 . pp. 836-840. ISSN 0040-6090

Sijtsema, N.M. and Otto, C. and Segers-Nolten, G.M.J. and Verhoeven, A.J. and Greve, J. (1998) Resonance Raman Microspectroscopy of Myeloperoxidase and Cytochrome b558 in Human Neutrophilic Granulocytes. Biophysical Journal, 74 (6). pp. 3250-3255. ISSN 0006-3495

Blum, Christian and Meixner, Alfred J. and Subramaniam, Vinod (2004) Room Temperature Spectrally Resolved Single-Molecule Spectroscopy Reveals New Spectral Forms and Photophysical Versatility of Aequorea Green Fluorescent Protein Variants. Biophysical Journal, 87 (6). pp. 4172-4179. ISSN 0006-3495

Bruin, S.C. and Ronde, J.J. de and Wiering, B. and Braaf, L.M. and Wilt, J.H. de and Vincent, A.D. and Velthuysen, M.L. van and Ruers, T.J.M. and Wessels, L.F. and Veer, L.J. van 't (2013) Selection of patients for hepatic surgery of colorectal cancer liver metastasis based on genomic aberrations. Annals of surgical oncology, 20 (3, suppl). 560 - 569. ISSN 1068-9265

Friggeri, Arianna and Veggel, Frank C.J.M. van and Reinhoudt, David N. and Kooyman, Rob P.H. (1998) Self-assembled monolayers of cavitand receptors for the binding of neutral molecules in water. Langmuir, 14 (19). pp. 5457-5463. ISSN 0743-7463

Schlereth, Daniela D. and Kooyman, Rob P.H. (1998) Self-assembled monolayers with biospecific affinity for NAD(H)-dependent dehydrogenases: Characterization by surface plasmon resonance combined with electrochemistry 'in situ'. Journal of Electroanalytical Chemistry, 444 (2). pp. 231-240. ISSN 1572-6657

Schlereth, Daniela D. and Kooyman, Rob P.H. (1997) Self-assembled monolayers with biospecific affinity for lactate dehydrogenase for the electroenzymatic oxidation of lactate. Journal of Electroanalytical Chemistry, 431 (2). pp. 285-295. ISSN 1572-6657

Masarik, Michal and Stobiecka, Agata and Kizek, René and Jelen, Frantisek and Pechan, Zdenk and Hoyer, Wolfgang and Subramaniam, Vinod and Palecek, Emil (2004) Sensitive Electrochemical Detection of Native and Aggregated -Synuclein Protein Involved in Parkinson's Disease. Electroanalysis, 16 (13-14). pp. 1172-1181. ISSN 1040-0397

Bussiek, Malte and Hoischen, Christian and Diekmann, Stephan and Bennink, Martin L. (2009) Sequence-specific physical properties of African green monkey alpha-satellite DNA contribute to centromeric heterochromatin formation. Journal of Structural Biology, 167 (1). pp. 36-46. ISSN 1047-8477

Besselink, Geert A.J. and Kooyman, Rob P.H. and Os, Peter J.H.J. van and Engbers, Gerard H.M. and Schasfoort, Richard B.M. (2004) Signal amplification on planar and gel-type sensor surfaces in surface plasmon resonance-based detection of prostate-specific antigen. Analytical Biochemistry, 333 (1). pp. 165-173. ISSN 0003-2697

Gill, R. and Tian, L. and Somerville, W.R.C. and Ru, E.C. le and Amerongen, H. and Subramaniam, V. (2012) Silver Nanoparticle Aggregates as Highly Efficient Plasmonic Antennas for Fluorescence Enhancement. Journal of physical chemistry C, 116 (31). 16687 - 16693. ISSN 1932-7447

Pope, L.H. and Bennink, M.L. and Leijenhorst-Groener, K.A. van and Nikova, D. and Greve, J. and Marko, J.F. (2001) Single Chromatin Fiber Stretching Reveals Physically Distinct Populations of Disassembly Events. Biophysical Journal, 88 (5). pp. 3572-3583. ISSN 0006-3495

Bennink, M.L. and Pope, L.H. and Leuba, S.H. and Grooth, B.G. de and Greve, J. (2001) Single Chromatin Fibre Assembly Using Optical Tweezers. Single Molecules, 2 (2). pp. 91-97. ISSN 1438-5163

Murade, Chandrashekhar U. and Subramaniam, Vinod and Otto, Cees and Bennink, Martin L. (2011) Single DNA molecule force spectroscopy to probe interactions with the tri-peptide Lys-Trp-Lys. ChemPhysChem, 12 (14). 2545 - 2548. ISSN 1439-4235

Blum, Christian and Meixner, Alfred J. and Subramaniam, Vinod (2006) Single Oligomer Spectra Probe Chromophore Nanoenvironments of Tetrameric Fluorescent Proteins. Journal of the American Chemical Society, 128 (26). pp. 8664-8670. ISSN 0002-7863

Garcia-Parajo, Maria F. and Koopman, Marjolein and Dijk, Erik M.H.P. van and Subramaniam, Vinod and Hulst, Niek F. van (2002) Single molecule studies of the red autofluorescent protein DsRed. Biophysical Journal, 82 (1). p. 234. ISSN 0006-3495

Veldhuis, Gertjan and Segers-Nolten, Ine and Ferleman, Eva and Subramaniam, Vinod (2008) Single-Molecule FRET Reveals Structural Heterogeneity of SDS-Bound α-Synuclein. ChemBioChem, 10 (3). pp. 436-439. ISSN 1439-4227

Bennink, Martin L. and Scharer, Orlando D. and Kanaar, Ronald and Sakata-Sogawa, Kumiko and Schins, Juleon M. and Kanger, Johannes S. and Grooth, Bart G. de and Greve, Jan (1999) Single-molecule manipulation of double-stranded DNA using optical tweezers: Interaction studies of DNA with RecA and YOYO-1. Cytometry Part A, 36 (3). pp. 200-208. ISSN 0196-4763

Mulder, H.K.P. and Ymeti, A. and Subramaniam, V. and Kanger, J.S. (2012) Size-selective detection in integrated optical interferometric biosensor. Optics express, 20 (19). 20934 - 20950. ISSN 1094-4087

Volkova, K.D. and Kovalska, V.B. and Balanda, A.O. and Losytskyy, M.Yu and Golub, A.G. and Vermeij, R.J. and Subramaniam, V. and Tolmachev, O.I. and Yarmoluk, S.M. (2008) Specific fluorescent detection of fibrillar α-synuclein using mono- and trimethine cyanine dyes. Bioorganic & Medicinal Chemistry, 16 (3). pp. 1452-1459. ISSN 0968-0896

Blum, Christian and Meixner, Alfred J. and Subramaniam, Vinod (2008) Spectral Versatility of Single Reef Coral Fluorescent Proteins Detected by Spectrally-Resolved Single Molecule Spectroscopy. ChemPhysChem, 9 (2). pp. 310-315. ISSN 1439-4235

Drescher, Malte and Godschalk, Frans and Veldhuis, Gertjan and Rooijen, Bart D. van and Subramaniam, Vinod and Huber, Martina (2008) Spin-Label EPR on α-Synuclein Reveals Differences in the Membrane Binding Affinity of the Two Antiparallel Helices. ChemBioChem, 9 (15). pp. 2411-2416. ISSN 1439-4227

Kanger, Johannes S. and Tukker, Teunis W. and Otto, Cees and Greve, Jan (1996) Stimulated Raman gain scattering in planar dielectric waveguides. Optics Letters, 21 (9). pp. 671-673. ISSN 0146-9592

Kanger, Johannes S. and Otto, Cees and Greve, Jan (1996) Stimulated Raman gain scattering in thin planar dielectric waveguides. Optics Letters, 20 (21). pp. 2231-2233. ISSN 0146-9592

Lieleg, Oliver and Schmoller, Kurt M. and Purdy Drew, Kirstin R. and Claessens, Mireille M.A.E. and Semmrich, Christine and Zheng, Lili and Bartles, James R. and Bausch, Andreas R. (2009) Structural and Viscoelastic Properties of Actin Networks Formed by Espin or Pathologically Relevant Espin Mutants. ChemPhysChem, 10 (16). pp. 2813-2817. ISSN 1439-4235

Rooijen, B.D. van and Leijenhorst-Groener, K.A. van and Claessens, M.M.A.E. and Subramaniam, V. (2010) Structural and functional insights into lipid binding by oligomeric alpha-synuclein. Biophysical journal, 98 (3, Suppl. 1). 653a. ISSN 0006-3495

Kooyman, R.P.H. and Krull, U.J. (1991) Surface Plasmon Microscopy of Two Crystalline Domains in a Lipid Monolayer. Langmuir, 7 (7). pp. 1506-1509. ISSN 0743-7463

Nandakumar, A. and Tahmasebi Birgani, Z. and Reis Santos, D. and Mentink, A. and Auffermann, N. and Werf, K.O. van der and Bennink, M.L. and Moroni, L. and Blitterswijk, C.A. van and Habibovic, P. (2013) Surface modification of electrospun fibre meshes by oxygen plasma for bone regeneration. Biofabrication, 5 (1). 015006. ISSN 1758-5082

Berger, Charles E.H. and Kooyman, Rob P.H. and Greve, Jan (1999) Surface plasmon propagation near an index step. Optics Communications, 167 (1-6). pp. 183-189. ISSN 0030-4018

Kooyman, R.P.H. and Bruijn, H.E. de and Eenink, R.G. and Greve, J. (1990) Surface plasmon resonance as a bioanalytical tool. Journal of Molecular Structure, 218 . pp. 345-350. ISSN 0022-2860

Kooyman, R.P.H. and Kolkman, H. and Gent, J. van and Greve, J. (1988) Surface plasmon resonance immunosensors: sensitivity considerations. Analytica Chimica Acta, 213 . pp. 35-45. ISSN 0003-2670

Heuvel, Dave J. van den and Kooyman, Rob P.H. and Drijfhout, Jan Wouter and Welling, Gjalt W. (1993) Synthetic Peptides as Receptors in Affinity Sensors: A Feasibility Study. Analytical Biochemistry, 215 (2). pp. 223-230. ISSN 0003-2697

Tagit, Oya and Tomczak, Nikodem and Benetti, Edmondo M. and Cesa, Yanina and Blum, Christian and Subramaniam, Vinod and Herek, Jennifer L. and Vancso, G. Julius (2009) Temperature-modulated quenching of quantum dots covalently coupled to chain ends of poly(N-isopropyl acrylamide) brushes on gold. Nanotechnology, 20 (181). p. 185501. ISSN 0957-4484

de Keijzer, S. and Meddens, M.B.M. and Torensma, R. and Cambi, A. (2013) The Multiple Faces of Prostaglandin E2 G-Protein Coupled Receptor Signaling during the Dendritic Cell Life Cycle. International journal of molecular sciences, 14 (4). 6542 - 6555. ISSN 1661-6596

Schipper, E.F. and Kooyman, R.P.H. and Borreman, A. and Greve, J. (1996) The critical sensor: a new type of evanescent wave immunosensor. Biosensors and Bioelectronics, 11 (3). pp. 295-304. ISSN 0956-5663

Olsson, A.L.J. and Narasimhan, A. and Kanger, J.S. and Busscher, H.J. and Ivanov, I.E. and Camesano, T.A. and Chen, Yun and Johannsmann, D. and Mei, H.C. van der and Sharma, P.K. (2012) The influence of ionic strength on the adhesive bond stiffness of oral streptococci possessing different surface appendages as probed using AFM and QCM-D. Soft matter, 8 (38). 9870 - 9876. ISSN 1744-683X

Schasfoort, R.B.M. and Bergveld, P. and Kooyman, R.P.H. and Greve, J. (1991) The ion-step-induced response of membrane-coated ISFETs: theoretical description and experimental verification. Biosensors and Bioelectronics, 6 (6). pp. 477-489. ISSN 0956-5663

Garcia-Parajo, M.F. and Koopman, M. and Dijk, E.M.H.P. van and Subramaniam, Vinod and Hulst, N.F. van (2001) The nature of fluorescence emission in the red fluorescent protein DsRed, revealed by single-molecule detection. Proceedings of the National Academy of Sciences of the United States of America, PNAS, 98 (25). pp. 14392-14397. ISSN 0027-8424

Manzo, C. and Torreno-Pina, J.A. and Joosten, B. and Reinieren-Beeren, I. and Gualda, E.J. and Loza-Alvarez, P. and Figdor, C.G. and Garcia Parajo, M.F. and Cambi, A. (2012) The neck region of the C-type lectin DC-SIGN regulates its surface spatiotemporal organization and virus-binding capacity on antigen presenting cells. Journal of biological chemistry, 287 (46). 38946 - 38955. ISSN 0021-9258

Schipper, E.F. and Brugman, A.M. and Lechuga, L.M. and Kooyman, R.P.H. and Greve, J. and Dominguez, C. (1997) The realization of an integrated Mach-Zehnder waveguide immunosensor in silicon technology. Sensors and Actuators B: Chemical, 40 (2-3). pp. 147-153. ISSN 0925-4005

Kooyman, R.P.H. and Heuvel, D.J. van den and Drijfhout, J.W. and Welling, G.W. (1994) The use of self-assembled receptor layers in immunosensors. Thin Solid Films, 244 (1-2). pp. 913-916. ISSN 0040-6090

Bruijn, Helene E. de and Minor, Marcel and Kooyman, Rob P.H. and Greve, Jan (1993) Thickness and dielectric constant determination of thin dielectric layers. Optics Communications, 95 (4-6). pp. 183-188. ISSN 0030-4018

Busby, Michael and Blum, Christian and Tibben, Marc and Fibikar, Sandra and Calzaferri, Gion and Subramaniam, Vinod and Cola, Luisa De (2008) Time, Space, and Spectrally Resolved Studies on J-Aggregate Interactions in Zeolite L Nanochannels. Journal of the American Chemical Society, 130 (33). pp. 10970-10976. ISSN 0002-7863

Segers-Nolten, Ine M.J. and Wilhelmus, Micha M.M. and Veldhuis, Gertjan and Rooijen, Bart D. van and Drukarch, Benjamin and Subramaniam, Vinod (2008) Tissue transglutaminase modulates α-synuclein oligomerization. Protein Science, 17 (8). pp. 1395-1402. ISSN 0961-8368

Zhang, X. and Gouriye, T. and Goeken, K.L. and Servos, M.R. and Gill, R. (2013) Toward fast and quantitative modification of large gold nanoparticles by thiolated DNA: scaling of nanoscale forces, kinetics, and the need for thiol reduction. Journal of physical chemistry, 117 (30). 15677 - 15684. ISSN 0022-3654

Greve, J. and Grooth, B.G. de and Hulst, N.F. van and Kooyman, R.P.H. and Otto, C. and Schins, J.M. (1996) Towards Molecular Resolution. Progress in Biophysics and Molecular Biology, 65 (Suppl.). p. 240. ISSN 0079-6107

Lieleg, O. and Claessens, M.M.A.E. and Luan, Y. and Bausch, A.R. (2008) Transient Binding and Dissipation in Cross-Linked Actin Networks. Physical Review Letters, 101 (10). p. 108101. ISSN 0031-9007

Kovalska, V.B. and Yu Losytskyy, M. and Tolmachev, O.I. and Slominskii, Yu.L. and Segers-Nolten, G.M.J. and Subramaniam, V. and Yarmoluk, S.M. (2012) Tri- and pentamethine cyanine dyes for fluorescent detection of alpha-synuclein oligomeric aggregates. Journal of fluorescence, 22 (6). 1441 - 1448. ISSN 1053-0509

Rooijen, B.D. van and Leijenhorst-Groener, K.A. van and Claessens, M.M.A.E. and Subramaniam, V. (2009) Tryptophan Fluorescence Reveals Structural Features of α-Synuclein Oligomers. Journal of Molecular Biology, 394 (5). pp. 826-833. ISSN 0022-2836

Nikova, Dessy N. and Pope, Lisa H. and Bennink, Martin L. and Leijenhorst-Groener, Kirsten A. van and Werf, Kees van der and Greve, Jan (2001) Unexpected Binding Motifs for Subnucleosomal Particles Revealed by Atomic Force Microscopy. Biophysical Journal, 87 (6). pp. 4135-4145. ISSN 0006-3495

Kooyman, Rob P.H. and Lenferink, Aufried T.M. and Eenink, Rob G. and Greve, Jan (1991) Vibrating mirror surface plasmon resonance immunosensor. Analytical Chemistry, 63 (1). pp. 83-85. ISSN 0003-2700

Garcia-Parajo, M.F. and Veerman, J.A. and Segers-Nolten, G.M.J. and Grooth, B.G. de and Greve, J. and Hulst, N.F. van (1999) Visualising Individual Green Fluorescent Proteins With a Near Field Optical Microscope. Cytometry Part A, 36 (3). pp. 239-246. ISSN 0196-4763

Cambi, A. and Lakadamyali, M. and Lidke, D.S. and Garcia-Parajo, M.F. (2013) Visualizing signaling nanoplatforms at a higher spatiotemporal resolution. Journal of cell science, 126 . 3817 - 3821. ISSN 0021-9533

Hoang, T.H. and Tong, H.D. and Segers-Nolten, G.M.J. and Tas, N.R. and Subramaniam, V. and Elwenspoek, M.C. (2012) Wafer-scale thin encapsulated two-dimensional nanochannels and its application toward visualization of single molecules. Journal of colloid and interface science, 367 (1). 455 - 459. ISSN 0021-9797

Book Section

Postma, S. and Offerhaus, H. and Subramaniam, V. and Hulst, N. van (2007) Coherent control of two photon fluorescence with a high-resolution spectral phase shaper. In: Ultrafast Phenomena XV. Springer series in chemical physics, 88 . Springer, pp. 208-210. ISBN 9783540687818

Verdoold, R. and Ungureanu, F. and Wasserberg, D. and Kooyman, R.P.H. (2009) Gold nanoparticle assays: towards single molecule unamplified DNA detection. In: Advanced Environmental, Chemical, and Biological Sensing Technologies VI. Proceedings of SPIE, 7312 . SPIE, 73120N. ISBN 9780819475787

Garcia-Parajo, M.F. and Veerman, J.A. and Segers-Nolten, G.M.J. and Grooth, B.G. de and Greve, J. and Hulst, N.F. van (1999) Individual green fluorescent proteins (GFP) studied by near-field optical microscopy. In: Spectroscopy of biological molecules: new directions : 8th European conference on the spectroscopy of biological molecules, 29 August-2 September 1999, Enschede, The Netherlands. , Universiteit Twente, pp. 89-92. ISBN 9780792358473

Schleifenbaum, F. and Blum, C. and Elgass, K. and Peter, S. and Subramaniam, V. and Meixner, A.J. (2009) Multiparameter single molecule spectroscopy gives insight into the complex photophysics of fluorescence energy transfer (FRET) coupled biosystems. In: Reporters, Markers, Dyes, Nanoparticles, and Molecular Probes for Biomedical Applications. Proceedings of SPIE, 7190 . SPIE, 71900U. ISBN 9780819474360

Varghese, Babu and Rajan, Vinayakrishnan and Steenbergen, Wiendelt and Leeuwen, Ton G. van (2009) Path length resolved optical Doppler flowmetry. In: Biomedical Applications of Light Scattering III. Proceedings of SPIE, 7187 . SPIE, 71870A. ISBN 9780819474339

Segers-Nolten, Ine and Werf, Kees van der and Raaij, Martijn van and Subramaniam, Vinod (2007) Quantitative Characterization of Protein Nanostructures Using Atomic Force Microscopy. In: Proceedings of the 29th Annual International Conference of the IEEE EMBS. IEEE, pp. 6608-6611. ISBN 9781424407873

Molenaar, R. and Bratchenia, A. and Kooyman, R.P.H. (2009) Quantitative acousto-optic imaging in tissue-mimicking phantoms. In: Medical Imaging 2009: Ultrasonic Imaging and Signal Processing. Proceedings of SPIE, 7265 . SPIE, 72650M. ISBN 9780819475169

Ymeti, Aurel and Dudia, Alma and Nederkoom, Paul H.J. and Subramaniam, Vinod and Kanger, Johannes S. (2009) Rapid, ultrasensitive detection of microorganisms based on interferometry and lab-on-a-chip nanotechnology. In: Optics and Photonics in Global Homeland Security V and Biometric Technology for Human Identification VI. Proceedings of SPIE, 7306 . SPIE, 73060J. ISBN 9780819475725

Garcia-Parajo, M.F. and Segers-Nolten, G.M.J. and Veerman, J.A. and Greve, J. and Hulst, N.F. van (1999) Real time light-driven dynamics of the fluorescence emission in individual copies of the green fluorescent protein. In: Jaarboek 1999 - Nederlandse Vereniging voor Microscopie. Press Point, Rijnsburg, pp. 40-41.

Lindhoud, S. and Cohen Stuart, M.A. (2013) Relaxation phenomena during polyelectrolyte complex formation. In: Polyelectrolyte Complexes in the Dispersed and Solid State I, Principles and Theory. , 139 - 172. ISBN 9783642407338

Kooyman, R.P.H. (2000) Surface Plasmon Resonance, Instrumentation. In: Encyclopedia of Spectroscopy and Spectrometry. Academic Press, pp. 2302-2310. ISBN 9780122266805

Ungureanu, Felicia and Halamek, Jan and Verdoold, Remco and Kooyman, Rob P.H. (2009) The use of a colour camera for quantitative detection of protein-binding nanoparticles. In: Plasmonics in Biology and Medicine VI. Proceedings of SPIE, 7192 . SPIE, p. 719200. ISBN 9780819474384

Bratchenia, A. and Molenaar, R. and Kooyman, R.P.H. (2009) Three-dimensional acousto-optic mapping using planar scanning with ultrasound bursts. In: Photons Plus Ultrasound: Imaging and Sensing 2009. Proceedings of SPIE, 7177 . SPIE, 71771H. ISBN 9780819474230

Draijer, Matthijs J. and Hondebrink, Erwin and Steenbergen, Wiendelt and Leeuwen, Ton G. van (2009) Time domain algorithm for whole field laser Doppler perfusion imaging. In: Optical Diagnostics and Sensing IX. Proceedings of SPIE, 7186 . SPIE, p. 718608. ISBN 9780819474322

Conference or Workshop Item

Blum, Christian and Correia, Sebastiao and Dorigo, Marco and Paechter, Ben and Rossi-Doria, Olivia and Snoek, Marko (2002) A GA Evolving Instructions for a Timetable Builder. In: 4th International Conference on the Practice and Theory of Automated Timetabling, PATAT 2002, August 21-23, 2002, Gent, Belgium (pp. pp. 120-123).

Bernhardi, E.H. and Werf, K.O. van der and Hollink, A.J.F. and Worhoff, K. and Ridder, R.M. de and Subramaniam, V. and Pollnau, M. (2012) Evanescent-field intra-cavity sensing with a dual-wavelength distributed-feedback laser. In: Conference on Lasers and Electro-Optics, San Jose, California, USA, 01-05-2012, Washington, DC (pp. Paper CM3B.5 - Paper CM3B.5).

Hoang, T.H. and Segers-Nolten, I. and Tas, N.R. and Boer, M.J. de and Subramaniam, V. and Elwenspoek, M.C. (2007) Fabrication of 1d nanochannels with thin glass wafers for single molecule studies. In: Technical Proceedings of the 2007 NSTI Nanotechnology Conference and Trade Show, 20-24 May 2007, Santa Clara, Californië USA (pp. pp. 260-263).

Rusu, Cristina and Oever, Ronny van 't and Boer, Meint de and Jansen, Henri and Berenschot, Erwin and Bennink, M.L. and Kanger, J.S. and Grooth, B.G. de and Elwenspoek, Miko and Greve, J. and Berg, A. van den and Brugger, J. (2000) Fabrication of micromachined pipettes in a flow channel for single molecule handling of DNA. In: Thirteenth Annual International Conference on Micro Electro Mechanical Systems, MEMS, January 23-27, 2000, Miyazaki, Japan (pp. pp. 429-434).

Bertolotti, J. and Putten, E.G. van and Blum, C. and Lagendijk, A. and Vos, W.L. and Mosk, A.P. (2013) Imaging Through Scattering Media. In: Computational Optical Sensing and Imaging (COSI), Arlington, VA, 23-27 June 2013, 23-06-2013 - 27-06-2013, Arlington, VA (pp. P1 - 3).

Hopman, W.C.L. and Werf, K.O. van der and Hollink, A.J.F. and Bogaerts, W. and Subramaniam, V. and Ridder, R.M. de (2006) Interactions with a photonic crystal micro-cavity using AFM in contact or tapping mode operation. In: IEEE/LEOS Benelux Chapter 2006 Annual Symposium, November 30 - December 1, 2006, Eindhoven, The Netherlands (pp. pp. 25-28).

Rusu, Cristina and Oever, Ronny van 't and Boer, Meint de and Jansen, Henri and Berenschot, Erwin and Elwenspoek, Miko and Bennink, Martin L. and Kanger, Johannes S. and Grooth, Bart G. de and Greve, Jan and Brugger, Jürgen and Berg, Albert van den (2000) Micromachined pipettes integrated in a flow channel for single DNA molecule study by optical trapping. In: Micro- and Nanotechnology for Biomedical and Environmental Applications, 26-27 January 2000, San Jose, California, USA (pp. pp. 41-49).

Kooyman, R.P.H. and Heideman, R.G. and Koster, R. and Greve, J. (1991) Optical fiber immunosensor based on polarimetry. In: International Conference on Solid-State Sensors and Actuators, TRANSDUCERS, 24-27 June 1991, San Fransisco, USA (pp. pp. 376-377).

Vardanyan, A.G. and Hulst, N.F. van and Kanger, J.S. and Otto, C. and Greve, J. (1994) Polarisation-sensitive coherent anti-Stokes and spontaneous Raman spectroscopy of calix[4]arene films. In: Conference on Lasers and Electro-Optics, Europe, CLEO'94, Aug. 28 - Sept. 2, 1994, Amsterdam, The Netherlands (pp. pp. 252-253).

Ymeti, Aurel and Kanger, Johannes S. and Lambeck, Paul V. and Wijn, Robert and Heideman, Rene G. (2003) Realization and Characterization of a Four-Channel Integrated Optical Young Interferometer. In: 12th International Conference on Solid-State Sensors, Actuators and Microsystems, TRANSDUCERS 2003, 8-12 June 2003, Boston, MA, USA (pp. pp. 1192-1196).

Vardanyan, A.G. and Hulst, N.F. van and Kanger, J.S. and Otto, C. and Greve, J. (1994) Spontaneous Raman and CARS of Novel Organic Molecule Calix[4]arene. In: XIVth International Conference on Raman Spectroscopy, ICORS'94, 22-26 August 1994, Hong Kong (pp. pp. 448-449).

Uitert, Iris van and Cesa, Yanina and Boer, Hans de and Bomer, Johan and Bennink, Martin and Le Gac, Séverine and Berg, Albert van den (2008) Towards simultaneous electrical and optical investigation of BLMS using a novel microfluidic device. In: 12th International Conference on Miniaturized Systems for Chemistry and Life Sciences, 12-16 Oct 2008, San Diego, California (pp. pp. 194-196).

Lecture

Subramaniam, Vinod (2007) Biophysics of protein misfolding. [Lecture]

Petersen, N.O. (2013) Candles, Committees, and Nobility: The Future of Nanoscale Biological Sciences. [Lecture]

Thesis

Vandersteen, A. (2012) Aggregation and toxicity of amyloid-beta peptide in relation to peptide sequence variation. thesis.

Murade, Chandrashekhar Uttamrao (2010) Insights into DNA intercalation using combined optical tweezers and fluorescence microscopy. thesis.

Shekhar, S. (2012) Insights into Phagosome Maturation using Magnetic Tweezers. thesis.

Sweers, K.K.M. (2012) Nanoscale Structural and Mechanical Properties of Alpha-Synuclein Amyloid Fibrils. thesis.

Ligthart, S.T. (2012) Redefining circulating tumor cells by image processing. thesis.

Verdoold, R. (2012) Scattering gold nanoparticles: strategies for ultra sensitive DNA detection. thesis.

Ungureanu, F. (2012) Sensing with colors. thesis.

Segers-Nolten, Gezina Maria Johanna (2003) Single molecule fluorescence: from physical fascination to biological relevance. thesis.

This list was generated on Mon Sep 22 06:02:30 2014 CEST.