# Author Publications

**99**.

## 2016

Gagarina, E. and Ambati, V.R. and Nurijanyan, S. and Vegt, J.J.W. van der and Bokhove, O.
(2016)
*On variational and symplectic time integrators for Hamiltonian systems.*
Journal of computational physics, 306
.
pp. 370-389.
ISSN 0021-9991

## 2014

Bokhove, O. and Horn, A.J. van der and Meer, R.M. van der and Thornton, A.R. and Zweers, W.
(2014)
*On wave-driven "shingle" beach dynamics in a table-top Hele-Shaw cell.*
In: 34th Conference on Coastal Engineering 2014, 15-20 June 2014, Seoul, Korea.

Gagarina, E. and Ambati, V.R. and Vegt, J.J.W. van der and Bokhove, O.
(2014)
*Variational space–time (dis)continuous Galerkin method for nonlinear free surface water waves.*
Journal of computational physics, 275
.
pp. 459-483.
ISSN 0021-9991

Kristina, W. and Bokhove, O. and Groesen, E.W.C. van
(2014)
*Effective coastal boundary conditions for tsunami wave run-up over sloping bathymetry.*
Nonlinear processes in geophysics, 21
(5).
pp. 987-1005.
ISSN 1023-5809

Thornton, Anthony R. and Horn, Avraham J. van der and Gagarina, Elena and Zweers, Wout and Meer, Devaraj van der and Bokhove, Onno
(2014)
*Hele-Shaw beach creation by breaking waves: a mathematics-inspired experiment.*
Environmental fluid mechanics, 14
(5).
1123 - 1145.
ISSN 1567-7419

Tunuguntla, D.R. and Bokhove, O. and Thornton, A.R.
(2014)
*A mixture theory for size and density segregation in shallow granular free-surface flows.*
Journal of fluid mechanics, 749
.
pp. 99-112.
ISSN 0022-1120

## 2013

Bokhove, O. and Horn, A.J. van der and Meer, D. van der and Gagarina, E. and Zweers, W. and Thornton, A.R.
(2013)
*Revisiting Hele-Shaw dynamics to better understand beach evolution.*
[Report]

Gagarina, E. and Vegt, J. van der and Bokhove, O.
(2013)
*Horizontal circulation and jumps in Hamiltonian wave models.*
Nonlinear processes in geophysics, 20
(4).
pp. 483-500.
ISSN 1023-5809

Gagarina, E. and Vegt, J.J.W. van der and Ambati, V.R. and Bokhove, O.
(2013)
*Variational space-time (dis)continuous Galerkin method for nonlinear free surface waves.*
[Report]

Nurijanyan, S. and Bokhove, O. and Maas, L.R.M.
(2013)
*A new semi-analytical solution for inertial waves in a rectangular parallelepiped.*
Physics of fluids, 25
(12).
p. 126601.
ISSN 1070-6631

Nurijanyan, S. and Vegt, J.J.W. van der and Bokhove, O.
(2013)
*Hamiltonian discontinuous Galerkin FEM for linear, rotating incompressible Euler equations: inertial waves.*
Journal of computational physics, 241
.
pp. 502-525.
ISSN 0021-9991

Peeters, Bob and Oliver, Marcel and Bokhove, Onno and Molchanov, Vladimir
(2013)
*On the rate of convergence of the Hamiltonian particle-mesh method.*
In:
M. Griebel
&
M.A. Schweitzer
(Eds.),
Meshfree Methods for Partial Differential Equations VI.
Lecture notes in computational science and engineering, 89
.
Springer Verlag, Berlin, Germany, pp. 25-43.
ISBN 9783642329784

Thornton, A.R. and Krijgsman, D. and Fransen, R.H.A. and Gonzalez, S. and Tunuguntla, D. and Voortwis, A. te and Luding, S. and Bokhove, O. and Weinhart, T.
(2013)
*Mercury-DPM: Fast particle simulations in complex geometries.*
EnginSoft's SBE&S Magazine, 10
(1).
pp. 48-53.

Thornton, Anthony and Krijgsman, Dinant and Voortwis, Ate te and Ogarko, Vitaly and Luding, Stefan and Fransen, Rudi and Gonzalez, Sebastian and Bokhove, Onno and Imole, Olukayode and Weinhart, Thomas
(2013)
*A review of recent work on the discrete particle method at the University of Twente: an introduction to the open-source package MercuryDPM.*
In: , 5-8 August 2013, Golden, CO, United States (pp. pp. 50-56).

Thornton, Anthony and Horn, Avraham van der and Meer, Devaraj van der and Zweers, Wout and Bokhove, Onno
(2013)
*Hele-Shaw beach creation by breaking waves.*
[Report]

Zweers, Wout and Zwart, Valerie and Bokhove, Onno
(2013)
*Making waves: visualizing fluid flows.*
[Report]

## 2012

Bokhove, O. and Thornton, A.R.
(2012)
*Shallow granular flows.*
In:
H.J. Fernando
(Ed.),
Handbook of Environmental Fluid Dynamics, Volume One: Overview and Fundamentals.
CRC Press, pp. 545-556.
ISBN 9781439816691

Bokhove, Onno and Horn, Bram van der and Meer, Devaraj van der and Zweers, Wout and Thornton, Anthony
(2012)
*Breaking waves on a dynamic Hele-Shaw beach.*
[Report]

Bokhove, Onno and Horn, Bram van der and Meer, Devaraj van der and Zweers, Wout and Thornton, Anthony
(2012)
*Breaking waves on a dynamic Hele-Shaw beach.*
In: 3rd international Symposium on Shallow Flows, ISSF 2012, 3-6 June 2012, Iowa City, IA, USA.

Gagarina, Elena and Vegt, Jaap van der and Ambati, Vijaya and Bokhove, Onno
(2012)
*A Hamiltonian Boussinesq model with horizontally sheared currents.*
[Report]

Gagarina, Elena and Vegt, Jaap van der and Ambati, Vijaya and Bokhove, Onno
(2012)
*A Hamiltonian Boussinesq model with horizontally sheared currents.*
In: 3rd international Symposium on Shallow Flows, ISSF 2012, 3-6 June 2012, Iowa City, IA, USA.

Kristina, W. and Groesen, E. van and Bokhove, O.
(2012)
*Effective coastal boundary conditions for dispersive tsunami propagation.*
[Report]

Nurijanyan, S. and Bokhove, O. and Maas, L.R.M.
(2012)
*Inertial waves in a rectangular parallelepiped.*
[Report]

Thornton, Anthony and Weinhart, Thomas and Luding, Stefan and Bokhove, Onno
(2012)
*Modeling of particle size segregation: calibration using the discrete particle method.*
International journal of modern physics C: Physics and computers, 23
(8).
p. 1240014.
ISSN 0129-1831

Thornton, Anthony R. and Weinhart, Thomas and Luding, Stefan and Bokhove, Onno
(2012)
*Frictional dependence of shallow-granular flows from discrete particle simulations.*
European Physical Journal E: Soft Matter and Biological Physics, 35
(127).
ISSN 1292-8941

Weinhart, T. and Thornton, A.R. and Luding, S. and Bokhove, O.
(2012)
*From discrete particles to continuum fields near a boundary.*
Granular matter, 14
(2).
289 - 294.
ISSN 1434-5021

Weinhart, T. and Thornton, A.R. and Luding, S. and Bokhove, O.
(2012)
*Closure Relations for Shallow Granular Flows from Particle Simulations.*
Granular matter, 14
(4).
531 - 552.
ISSN 1434-5021

## 2011

Bokhove, Onno and Gagarina, Elena and Zweers, Wout and Thornton, Anthony
(2011)
*Bore-Soliton-Splash: van spektakel naar oceaangolf.*
[Report]

Nurijanyan, S. and Vegt, J.J.W. van der and Bokhove, O.
(2011)
*Hamiltonian discontinuous Galerkin FEM for linear, rotating incompressible Euler equations: inertial waves.*
[Report]

Sollie, W.E.H. and Bokhove, O. and Vegt, J.J.W. van der
(2011)
*Space-time discontinuous Galerkin finite element method for two-fluid flows.*
Journal of Computational Physics, 230
(3).
pp. 789-817.
ISSN 0021-9991

Thornton, Anthony and Weinhart, Thomas and Luding, Stefan and Bokhove, Onno
(2011)
*Friction dependence of shallow granular flows from discrete particle simulations.*
[Report]

Thornton, Anthony and Weinhart, Thomas and Luding, Stefan and Bokhove, Onno
(2011)
*Modeling of particle size segregation: Calibration using the discrete particle method.*
[Report]

Weinhart, Thomas and Thornton, Anthony and Luding, Stefan and Bokhove, Onno
(2011)
*Closure relations for shallow granular flows from particle simulations.*
[Report]

Weinhart, Thomas and Thornton, Anthony R. and Luding, Stefan and Bokhove, Onno
(2011)
*From discrete particles to continuum fields near a boundary.*
[Report]

## 2010

Bokhove, O. and Thornton, A.R.
(2010)
*Shallow granular flows.*
[Report]

Bokhove, Onno and Zwart, Valerie and Haveman, Martha J.
(2010)
*Fluid Fascinations.*
[Report]

Cotter, Colin and Bokhove, Onno
(2010)
*Variational water-wave model with accurate dispersion and vertical vorticity.*
Journal of Engineering Mathematics, 67
(1-2).
pp. 33-54.
ISSN 0022-0833

Thornton, Anthony and Weinhart, Thomas and Bokhove, Onno and Zhang, Bowen and Sar, Dick M. van der and Kumar, Kundan and Pisarenco, Maxim and Rudnaya, Maria and Savceno, Valeriu and Rademacher, Jens and Zijlstra, Julia and Szabelska, Alicja and Zyprych, Joanna and Schans, Martin van der and Timperio, Vincent and Veerman, Frits
(2010)
*Modeling and optimization of algae growth.*
In: 72nd European Study Group Mathematics with Industry, 25-29 January 2010, Amsterdam, the Netherlands.

Thornton, Anthony and Weinhart, Thomas and Bokhove, Onno and Zhang, Bowen and Sar, Dick M. van der and Kumar, Kundan and Pisarenco, Maxim and Rudnaya, Maria and Savcenco, Valeriu and Rademacher, Jens and Zijlstra, Julia and Szabelska, Alicja and Zyprych, Joanna and Schans, Martin van der and Timperio, Vincent and Veerman, Frits
(2010)
*Modeling and optimization of algae growth.*
[Report]

## 2009

Abbas, Micheline and Hoef, Martin van der and Bokhove, Onno and Kuipers, Hans
(2009)
*Discrete element study of liquid-solid slurry flows through constricted channels.*
In: 6th International Symposium on Multiphase Flow, Heat Mass Transfer and Energy Conversion, 11-15 July 2009, Xi'an, China (pp. pp. 329-334).

Bokhove, O. and Oliver, M.
(2009)
*A parcel formulation for Hamiltonian layer models.*
Geophysical and Astrophysical Fluid Dynamics, 103
(6).
pp. 423-442.
ISSN 0309-1929

Bokhove, O. and Oliver, M.
(2009)
*A parcel formulation for Hamiltonian layer models.*
[Report]

Bokhove, Onno and Ambati, Vijaya
(2009)
*Hybrid Rossby-shelf modes in a laboratory ocean.*
Journal of Physical Oceanography, 39
(10).
pp. 2523-2542.
ISSN 1520-0485

Bokhove, Onno and Deen, Niels and Hagmeijer, Rob and Sun, Chao , eds.
(2009)
*2nd FERMaT-IMPACT Meeting 13-16 October 2009 : book of abstracts.*
University of Twente, Institute of Mechanics, Processes and Control Twente (IMPACT), Enschede, the Netherlands.

Cotter, C. and Bokhove, O.
(2009)
*A water wave model with horizontal circulation and accurate dispersion.*
[Report]

Rhebergen, S. and Bokhove, O. and Vegt, J.J.W. van der
(2009)
*Discontinuous Galerkin finite element method for shallow two-phase flows.*
Computer Methods in Applied Mechanics and Engineering, 198
(5-8).
pp. 819-830.
ISSN 0045-7825

Sollie, W.E.H. and Bokhove, O. and Vegt, J.J.W. van der
(2009)
*Two fluid space-time discontinuous Galerkin finite element method. Part I: numerical algorithm.*
[Report]

## 2008

Akers, B. and Bokhove, O.
(2008)
*Hydraulic flow through a channel contraction: multiple steady states.*
Physics of Fluids , 20
.
056601.
ISSN 1070-6631

Ambati, V.R. and Vegt, J.J.W. van der and Bokhove, O.
(2008)
*Variational space-time (dis)continuous Galerkin method for linear free surface waves.*
[Report]

Besseling, Niels and Bokhove, Onno and Kolechkina, Alla and Molenaar, Jaap and Nooyen, Ronald van and Rottschäfer, Vivi and Stein, Alfred and Stoorvogel, Anton
(2008)
*Maths fights flooding.*
In: 63rd European Study Group Mathematics with Industry, 28 Jan - 1 Feb 2008, Enschede, The Netherlands (pp. pp. 47-63).

Bokhove, O. and Hurink, J.L. and Meinsma, G. and Stolk, C.C. and Vellekoop, M.H.
(2008)
*Preface.*
In: Proceedings of the 63rd European Study Group Mathematics with Industry, 28 Jan 2008 - 1 Feb 2008, Enschede, The Netherlands (pp. ii).

Bokhove, Onno and Ambati, Vijaya
(2008)
*Hybrid Rossby-shelf modes in a laboratory ocean.*
[Report]

Rhebergen, S. and Bokhove, O. and Vegt, J.J.W. van der
(2008)
*Discontinuous Galerkin finite element methods for hyperbolic nonconservative partial differential equations.*
Journal of computational physics, 227
(3).
pp. 1887-1922.
ISSN 0021-9991

Rhebergen, S. and Bokhove, O. and Vegt, J.J.W. van der
(2008)
*Discontinuous Galerkin finite element method for shallow two-phase flows.*
[Report]

Tassi, P.A. and Rhebergen, S. and Vionnet, C.A. and Bokhove, O.
(2008)
*A discontinuous Galerkin finite element model for river bed evolution under shallow flows.*
Computer Methods in Applied Mechanics and Engineering, 197
(33-40).
pp. 2930-2947.
ISSN 0045-7825

Xu, Yan and Vegt, Jaap J.W. van der and Bokhove, Onno
(2008)
*Discontinuous Hamiltonian finite element method for linear hyperbolic systems.*
Journal of Scientific Computing, 35
(2-3).
pp. 241-265.
ISSN 0885-7474

## 2007

Akers, B. and Bokhove, O.
(2007)
*Hydraulic flow through a contraction: multiple steady states.*
[Report]

Ambati, V.R. and Bokhove, O.
(2007)
*Space–time discontinuous Galerkin discretization of rotating shallow water equations.*
Journal of Computational Physics, 225
(2).
pp. 1233-1261.
ISSN 0021-9991

Ambati, V.R. and Bokhove, O.
(2007)
*Space-time discontinuous Galerkin finite element method for shallow water flows.*
Journal of Computational and Applied Mathematics, 204
(2).
pp. 452-462.
ISSN 0377-0427

Bokhove, Onno and Lynch, Peter
(2007)
*Air parcels and air particles: Hamiltonian dynamics.*
[Report]

Bokhove, Onno and Lynch, Peter
(2007)
*Air parcels and air particles: Hamiltonian dynamics.*
Nieuw archief voor wiskunde, Ser. 5, vol. 8
(2).
pp. 100-106.
ISSN 0028-9825

Pesch, L. and Bell, A. and Sollie, W.E.H. and Ambati, V.R. and Bokhove, O. and Vegt, J.J.W. van der
(2007)
*hpGEM -- A software framework for discontinuous Galerkin finite element methods.*
ACM Transactions on Mathematical Software, 33
(4).
p. 23.
ISSN 0098-3500

Rhebergen, S. and Bokhove, O. and Vegt, J.J.W. van der
(2007)
*Discontinuous Galerkin finite element methods for hyperbolic nonconservative partial differential equations.*
[Report]

Sollie, W.E.H. and Vegt, J.J.W. van der and Bokhove, O.
(2007)
*A space-time discontinuous Galerkin finite element method for two-fluid problems.*
[Report]

Tassi, P.A. and Rhebergen, S. and Vionnet, C.A. and Bokhove, O.
(2007)
*A discontinuous Galerkin finite element model for river bed evolution under shallow flows.*
[Report]

Vegt, J.J.W. van der and Izsák, F. and Bokhove, O.
(2007)
*Error analysis of a continuous-discontinous Galerkin finite element model for generalized 2D vorticity dynamics.*
SIAM Journal on Numerical Analysis, 45
(4).
pp. 1349-1369.
ISSN 0036-1429

Vreman, A.W. and Al-Tarazi, M. and Kuipers, J.A.M. and Sint Annaland, M. van and Bokhove, O.
(2007)
*Supercritical shallow granular flow through a contraction: experiment, theory and simulation.*
Journal of fluid mechanics, 578
.
pp. 233-269.
ISSN 0022-1120

Xu, Yan and Vegt, Jaap J.W. van der and Bokhove, Onno
(2007)
*Discontinuous Hamiltonian Finite Element Method for Bilinear Poisson Brackets.*
[Report]

## 2006

Ambati, V.R. and Bokhove, O.
(2006)
*Space-time discontinuous Galerkin discretization of rotating shallow water equations on moving grids.*
[Report]

Ambati, V.R. and Bokhove, O.
(2006)
*Flooding and drying in discontinuous Galerkin discretizations of shallow water equations.*
In: European Conference on Computational Fluid Dynamics 2006, ECCOMAS CFD 2006, 5-8 September 2006, Egmond aan Zee, The Netherlands (pp. p. 185).

Bernsen, E. and Bokhove, O. and Sar, D.M. van der
(2006)
*Numerical prediction of rose growth.*
Acta Horticulturae, 718
.
pp. 89-96.
ISSN 0567-7572

Bernsen, E. and Bokhove, O. and Vegt, J.J.W. van der
(2006)
*A (dis)continuous finite element model for generalized 2D vorticity dynamics.*
In: Proceedings ECCOMAS CFD 2006, 4-8 Sept. 2006, Egmond aan Zee.

Bernsen, E. and Bokhove, O. and Vegt, J.J.W. van der
(2006)
*A (dis)continuous finite element model for generalized 2D vorticity dynamics.*
Journal of Computational Physics, 211
(2).
pp. 719-747.
ISSN 0021-9991

Bokhove, O.
(2006)
*Spherical Hamiltonian isentropic two-layer model for atmospheric dynamics.*
In: Mathematical Theory and Modelling in Atmosphere-Ocean Science, 20-26 Aug 2006, Oberwolfach (pp. pp. 2369-2372).

Bokhove, O. and Bernsen, E. and van der Sar, D.M.
(2006)
*Numerical prediction of rose growth.*
[Report]

Bokhove, O. and Oliver, M.
(2006)
*Parcel Eulerian-Lagrangian fluid dynamics for rotating geophysical flows.*
Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 462
(2073).
pp. 2575-2592.
ISSN 1364-5021

Pesch, L. and Bell, A. and Sollie, W.E.H. and Ambati, V.R. and Bokhove, O. and Vegt, J.J.W. van der
(2006)
*hpGEM -- A software framework for discontinuous Galerkin finite element methods.*
[Report]

Tassi, P.A. and Bokhove, O. and Vionnet, C.A.
(2006)
*Space discontinuous Galerkin method for shallow water flows - kinetic and HLLC flux, and potential vorticity generation.*
Advances in water resources, 30
.
pp. 998-1015.
ISSN 0309-1708

Woods, A.W. and Bokhove, O. and Boer, A. de and Hill, B.E.
(2006)
*Compressible magma flow in a two-dimensional elastic-walled dike.*
Earth and Planetary Science Letters, 246
(3-4).
pp. 241-250.
ISSN 0012-821X

## 2005

Al-Tarazi, M. and Bokhove, O. and Kuipers, J.A.M. and Sint Annaland, M. van and Vreman, A.W.
(2005)
*Reservoir formation in shallow granular flows through a contraction.*
[Report]

Bernsen, E. and Bokhove, O. and Vegt, J.J.W. van der
(2005)
*A (Dis)continuous finite element model for generalized 2D vorticity dynamics.*
[Report]

Bokhove, O.
(2005)
*Hamiltonian restriction of Vlasov equations to rotating isopycnic and isentropic two-layer equations.*
Applied Mathematics Letters, 18
(12).
pp. 1418-1425.
ISSN 0893-9659

Bokhove, O. and Woods, A.W. and Boer, A. de
(2005)
*Magma flow through elastic-walled dikes.*
Theoretical and computational fluid dynamics, 19
(4).
pp. 261-286.
ISSN 0935-4964

Bokhove, Onno
(2005)
*Flooding and drying in discontinuous Galerking finite element discretizations of shallow-water equations. Part 1: One dimension.*
Journal of Scientific Computing, 22-23
(1-3).
pp. 47-82.
ISSN 0885-7474

Vegt, J.J.W. van der and Ambati, V.R. and Bokhove, O.
(2005)
*An Implicit Discontinuous Galerkin Finite Element Method for Water Waves.*
In: 7th International Conference on Mathematical and Numerical Aspects of Waves, WAVES 2005, 20-24 June 2005, Providence, Rhode Island, USA.

Vegt, J.J.W. van der and Izsák, F. and Bokhove, O.
(2005)
*Error analysis of a continuous-discontinuous Galerkin finite element method for generalized 2D vorticity dynamics.*
[Report]

## 2003

Bokhove, O.
(2003)
*Flooding and drying in finite-element discretizations of shallow-water equations. Part 1: One dimension.*
[Report]

Bokhove, O.
(2003)
*Flooding and drying in finite-element discretizations of shallow-water equations. Part 2: Two dimensions.*
[Report]

Bokhove, O. and Verkley, W.T.M.
(2003)
*Constrained isentropic models of tropospheric dynamics.*
[Report]

## 2002

Bokhove, O.
(2002)
*Eulerian variational principles for stratified hydrostatic equations.*
Journal of the Atmospheric Sciences, 59
(9).
pp. 1619-1628.
ISSN 1520-0469

Bokhove, O.
(2002)
*Balanced models in geophysical fluid dynamics: Hamiltonian formulation, constraints and formal stability.*
In:
J. Norbury
&
I. Roulstone
(Eds.),
Large-Scale Atmosphere-Ocean Dynamics.
Cambridge University Press, Cambridge, pp. 1-63.
ISBN 9780521807579

Bokhove, O. and Woods, A.W.
(2002)
*The decompression of basaltic magma into a sub-surface repository.*
[Report]

Bokhove, O. and Woods, A.W.
(2002)
*Decompression of magma into repository tunnels.*
[Report]

Vanneste, J. and Bokhove, O.
(2002)
*Dirac-bracket approach to nearly geostrophic Hamiltonian balanced models.*
Physica D: Nonlinear phenomena, 164
(3-4).
pp. 152-167.
ISSN 0167-2789

Woods, Andrew W. and Sparks, Steve and Bokhove, Onno and Lejeune, Anne-Marie and Connor, Charles B. and Hill, Britain E.
(2002)
*Modelling magma-drift interaction at the proposed high-level radioactive waste repository at Yucca Mountain, Nevada, USA.*
Geophysical Research Letters, 29
(13).
19.1-19.4.
ISSN 0094-8276

## 2001

Bokhove, O.
(2001)
*Two-dimensional magma-repository interactions.*
[Report]

Bokhove, O.
(2001)
*Numerical modeling of magma-repository interactions.*
[Report]

## 2000

Bokhove, Onno
(2000)
*On hydrostatic flows in isentropic coordinates.*
Journal of Fluid Mechanics, 402
.
pp. 291-310.
ISSN 0022-1120

## 1999

Bokhove, Onno and Johnson, E.R.
(1999)
*Hybrid coastal and interior modes for two-dimensional flow in a cylindrical ocean.*
Journal of Physical Oceanography, 29
(2).
pp. 93-118.
ISSN 1520-0485

**Sat Oct 1 05:29:18 2016 CEST**.