Author Publications

2013

Arntz, M.M.H.D. and Otter den, W.K. and Beeftink, H.H. and Boom, R.M. and Briels, W.J. (2013) The influence of end walls on the segregation pattern in a horizontal rotating drum. Granular matter, 15 (1). 25 - 38. ISSN 1434-5021

2012

Beer de, S.J.A. and Otter den, W.K. and Ende van den, H.T.M. and Briels, W.J. and Mugele, F. (2012) Can confinement-induced variations in the viscous dissipation be measured? Tribology letters, 48 (1). 1 - 9. ISSN 1023-8883

Beer de, S.J.A. and Otter den, W.K. and Ende van den, H.T.M. and Briels, W.J. and Mugele, F. (2012) Non-monotonic variation of viscous dissipation in confined liquid films: A reconciliation. EPL = Europhysics letters, 97 (4). 46001/1 - 46001/6. ISSN 0295-5075

Santos de Oliveira, I.S. and Otter den, W.K. and Briels, W.J. (2012) The origin of flow-induced alignment of spherical colloids in shear-thinning viscoelastic fluids. Journal of chemical physics, 137 . 204908/1 - 204908/9. ISSN 0021-9606

2010

Arntz, M.M.H.D. and Otter den, W.K. and Beeftink, H.H. and Boom, R.M. and Briels, W.J. (2010) Repeated segregation and energy dissipation in an axially segregated granular bed. EPL: a Letters Journal Exploring the Frontiers of Physics, 92 . 54004 - . ISSN 0295-5075

Otter den, Wouter K. and Renes, Marten R. and Briels, W.J. (2010) Self-assembly of three-legged patchy particles into polyhedral cages. Journal of Physics: Condensed matter, 22 (10). p. 104103. ISSN 0953-8984

Otter den, Wouter K. and Renes, Marten R. and Briels, Wim J. (2010) Asymmetry as the Key to Clathrin Cage Assembly. Biophysical Journal, 99 (4). pp. 1231-1238. ISSN 0006-3495

2009

Otter den, Wouter K. (2009) Free energies of stable and metastable pores in lipid membranes under tension. Journal of Chemical Physics, 131 (20). p. 205101. ISSN 0021-9606

2008

Arntz, M.M.H.D. and Otter den, W.K. and Briels, W.J. and Bussmann, P.J.T. and Beeftink, H.H. and Boom, R.M. (2008) Granular mixing and segregation in a horizontal rotating drum: a simulation study on the impact of rotational speed and fill level. AIChE Journal, 54 (12). pp. 3133-3146. ISSN 0001-1541

Notman, Rebecca and Anwar, Jamshed and Briels, W.J. and Noro, Massimo G. and Otter den, Wouter K. (2008) Simulations of Skin Barrier Function: Free Energies of Hydrophobic and Hydrophilic Transmembrane Pores in Ceramide Bilayers. Biophysical Journal, 95 (10). pp. 4763-4771. ISSN 0006-3495

Otter den, W.K. and Notman, R. and Anwar, J. and Noro, M.G. and Briels, W.J. (2008) Modulating the skin barrier function by DMSO: molecular dynamics simulations of hydrophilic and hydrophobic transmembrane pores. Chemistry and Physics of Lipids, 154 (S1). S2-S3. ISSN 0009-3084

Thakre, Amol K. and Otter den, W.K. and Padding, J.T. and Briels, W.J. (2008) Spinodal decomposition of asymmetric binary fluids in a micro-Couette geometry simulated with molecular dynamics. Journal of Chemical Physics, 129 (7). 074505. ISSN 0021-9606

Thakre, Amol K. and Padding, J.T. and Otter den, W.K. and Briels, W.J. (2008) Molecular dynamics simulation of phase separating binary liquids in cylindrical Couette flow. Journal of Chemical Physics, 128 (15). p. 154707. ISSN 0021-9606

Thakre, Amol K. and Otter den, W.K. and Briels, W.J. (2008) Domain formation and growth in spinodal decomposition of a binary fluid by molecular dynamics simulations. Physical Review E: Statistical, nonlinear, and soft matter physics, 77 (1). 011503. ISSN 1539-3755

Thakre, Amol K. and Padding, J.T. and Otter den, W.K. and Briels, W.J. (2008) Finite system size effects in the interfacial dynamics of binary liquid films. Journal of Chemical Physics, 129 (4). 044701. ISSN 0021-9606

2007

Noort van den, A. and Otter den, W.K. and Briels, W.J. (2007) Coarse graining of slow variables in dynamic simulations of soft matter. Europhysics Letters, 80 (2). 28003-1-28003-5. ISSN 0295-5075

Notman, Rebecca and Otter den, Wouter K. and Noro, Massimo G. and Briels, W.J. and Anwar, Jamshed (2007) The Permeability Enhancing Mechanism of DMSO in Ceramide Bilayers Simulated by Molecular Dynamics. Biophysical Journal, 93 (6). pp. 2056-2068. ISSN 0006-3495

Otter den, W.K. and Shkulipa, S.A. (2007) Intermonolayer Friction and Surface Shear Viscosity of Lipid Bilayer Membranes. Biophysical Journal, 93 (2). pp. 423-433. ISSN 0006-3495

2006

Hoogenboom, Jacob P. and Otter den, Wouter K. and Offerhaus, Herman L. (2006) Accurate and unbiased estimation of power-law exponents from single-emitter blinking data. Journal of Chemical Physics, 125 (20). pp. 204713-1. ISSN 0021-9606

Shkulipa, S.A. and Otter den, W.K. and Briels, W.J. (2006) Thermal Undulations of Lipid Bilayers Relax by Intermonolayer Friction at Submicrometer Length Scales. Physical Review Letters, 96 (17). p. 178302. ISSN 0031-9007

Shkulipa, S.A. and Otter den, W.K. and Briels, W.J. (2006) Simulations of the dynamics of thermal undulations in lipid bilayers in the tensionless state and under stress. Journal of Chemical Physics , 125 (23). p. 234905. ISSN 0021-9606

Tao, Yu-Guo and Otter den, W.K. and Briels, W.J. (2006) Shear Viscosities and Normal Stress Differences of Rigid Liquid-Crystalline Polymers. Macromolecules, 39 (17). pp. 5939-5945. ISSN 0024-9297

Tao, Yu-Guo and Otter den, W.K. and Briels, W.J. (2006) Periodic orientational motions of rigid liquid-crystalline polymers in shear flow. Journal of Chemical Physics, 124 (20). p. 204902. ISSN 0021-9606

Tao, Yu-Guo and Otter den, W.K. and Dhont, J.K.G. and Briels, W.J. (2006) Isotropic-nematic spinodals of rigid long thin rodlike colloids by event-driven Brownian dynamics simulations. Journal of Chemical Physics, 124 (13). p. 134906. ISSN 0021-9606

Wohlert, J. and Otter den, W.K. and Edholm, O. and Briels, W.J. (2006) Free energy of a trans-membrane pore calculated from atomistic molecular dynamics simulations. Journal of Chemical Physics, 124 (15). p. 154905. ISSN 0021-9606

2005

Boek, E.S. and Padding, J.T. and Otter den, W.K. and Briels, W.J. (2005) Mechanical Properties of Surfactant Bilayer Membranes from Atomistic and Coarse-Grained Molecular Dynamics Simulations. Journal of Physical Chemistry B, 109 (42). pp. 19851-19858. ISSN 1520-6106

Shkulipa, S.A. and Otter den, W.K. and Briels, W.J. (2005) Surface Viscosity, Diffusion, and Intermonolayer Friction: Simulating Sheared Amphiphilic Bilayers. Biophysical Journal, 89 (2). pp. 823-829. ISSN 0006-3495

Tao, Yu-Guo and Otter den, W.K. and Briels, W.J. (2005) Kayaking and wagging of rods in shear flow. Physical Review Letters, 95 (2). p. 237802. ISSN 0031-9007

Tao, Yu-Guo and Otter den, W.K. and Padding, J.T. and Dhont, J.K.G. and Briels, W.J. (2005) Brownian dynamics simulations of the self- and collective rotational diffusion coefficients of rigid long thin rods. Journal of Chemical Physics, 122 (2). p. 244903. ISSN 0021-9606

2004

Tolpekina, T.V. and Otter den, W.K. and Briels, W.J. (2004) Nucleation free energy of pore formation in an amphiphilic bilayer studied by molecular dynamics simulations. Journal of Chemical Physics, 121 (12). p. 12060. ISSN 0021-9606

Tolpekina, T.V. and Otter den, W.K. and Briels, W.J. (2004) Simulations of stable pores in membranes: System size dependence and line tension. Journal of Chemical Physics, 121 (16). pp. 8014-8020. ISSN 0021-9606

2003

Otter den, W.K. and Briels, W.J. (2003) The bending rigidity of an amphiphilic bilayer from equilibrium and nonequilibrium molecular dynamics. Journal of Chemical Physics, 118 (10). pp. 4712-4720. ISSN 0021-9606

Otter den, W.K. and Shkulipa, S.A. and Briels, W.J. (2003) Buckling and persistence length of an amphiphilic worm from molecular dynamics simulations. Journal of Chemical Physics, 119 (4). pp. 2363-2368. ISSN 0021-9606

2002

Otter den, W.K. and Kröhn, M. and Clarke, J.H.R. (2002) Geometric approach to the pressure tensor and the elastic constants. Physical Review E: Statistical, nonlinear, and soft matter physics, 65 (1). 016704. ISSN 1539-3755

2000

Otter den, W.K. and Briels, W.J. (2000) Free energy from molecular dynamics with multiple constraints. Molecular Physics, 98 (12). pp. 773-781. ISSN 0026-8976

1998

Otter den, W.K. and Briels, W.J. (1998) The calculation of free-energy differences by constrained molecular-dynamics simulations. Journal of Chemical Physics, 109 (11). pp. 4139-4146. ISSN 0021-9606

Otter den, W.K. and Briels, W.J. (1998) Solvent Effect on the Isomerization Rate of Calix[4]arene Studied by Molecular Dynamics Simulations. Journal of the American Chemical Society, 120 (50). pp. 13167-13175. ISSN 0002-7863

Otter den, Wouter Koenraad (1998) Molecular dynamics simulations of barrier crossings in the condensed phase. thesis.

1997

Otter den, W.K. and Briels, W.J. (1997) Molecular dynamics simulations of free energy and conformational transition rates of calix[4]arene in chloroform. Journal of Chemical Physics, 107 (13). pp. 4968-4978. ISSN 0021-9606

Otter den, W.K. and Briels, W.J. (1997) The reactive flux method applied to complex isomerization reactions: Using the unstable normal mode as a reaction coordinate. Journal of Chemical Physics, 106 (13). pp. 5494-5508. ISSN 0021-9606